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sshade:interface:user_manual [2017/10/09 09:20] – Bernard Schmitt | sshade:interface:user_manual [2018/01/30 18:44] (current) – Bernard Schmitt | ||
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+ | ====== SSHADE Interface ====== | ||
+ | ===== Quick reference guide ===== | ||
+ | === **[draft from GhoSST] => TODO** === | ||
+ | |||
+ | Access to the SSHADE interface: http:// | ||
+ | |||
+ | ==== General menu (upper left) ==== | ||
+ | |||
+ | |||
+ | === '' | ||
+ | |||
+ | ==== Home ==== | ||
+ | |||
+ | :: To go back to home page [Future: with a simple search] | ||
+ | |||
+ | ==== Search ==== | ||
+ | |||
+ | :*; Guided | ||
+ | :: Step by step search (2 starting options, 7 fields) | ||
+ | |||
+ | :*; Advanced | ||
+ | :: Search with 27 optional fields | ||
+ | |||
+ | ==== Login ==== | ||
+ | |||
+ | :: To login as a registered user in Ghosst | ||
+ | |||
+ | ----- | ||
+ | |||
+ | === '' | ||
+ | |||
+ | ==== Home ==== | ||
+ | :: To go back to home page [Future: with a simple search] | ||
+ | |||
+ | ==== Search ==== | ||
+ | :*; Guided | ||
+ | :: Step by step search (2 starting options, 7 fields) | ||
+ | |||
+ | :*; Advanced | ||
+ | :: Search with 27 optional fields | ||
+ | |||
+ | ==== Data ==== | ||
+ | :*; List | ||
+ | :: To search all used data in the database by categories and with a few filters | ||
+ | |||
+ | :*; Export | ||
+ | :: To download the selected data | ||
+ | |||
+ | ==== Producer (restr.) ==== | ||
+ | '' | ||
+ | |||
+ | :*; Full Search | ||
+ | :: To search all data entered in the database by categories with a few filters | ||
+ | |||
+ | :*; Import (in the database) | ||
+ | ::*; Matters | ||
+ | ::: To import matters | ||
+ | ::*; Sample | ||
+ | ::: To import samples | ||
+ | ::*; Experiment & Spectra | ||
+ | ::: To import experiments and their spectra | ||
+ | ::*; Bandlist | ||
+ | ::: To import bandlists and their bands | ||
+ | |||
+ | :*; Import history | ||
+ | :: Log of the data import | ||
+ | |||
+ | :*; Help | ||
+ | :: Gives access (wiki) to all documents and files necessary for import data | ||
+ | |||
+ | ==== Manager (restr.) ==== | ||
+ | '' | ||
+ | |||
+ | :*; Users | ||
+ | :: To list and manage user profiles | ||
+ | |||
+ | :*; OpenEnums | ||
+ | :: To list and manage attributes of OpenEnums | ||
+ | |||
+ | :*; Import (in the database) | ||
+ | ::*; Species | ||
+ | ::: To import fundamental species (atoms, molecules, chemical functions, minerals, …) | ||
+ | |||
+ | ::*; Instrument & Lab. | ||
+ | ::: To import instruments, | ||
+ | |||
+ | ::*; Publications | ||
+ | ::: To import publications | ||
+ | ::*; States | ||
+ | ::: To import molecular states | ||
+ | |||
+ | :*; Import history | ||
+ | :: Log of the data import | ||
+ | |||
+ | ==== User ==== | ||
+ | |||
+ | :*; Information | ||
+ | :: To change your personal information and login password | ||
+ | |||
+ | :*; Export history | ||
+ | :: Log of the user data export | ||
+ | |||
+ | :*; Logout | ||
+ | :: To logout as an external user from Ghosst | ||
+ | |||
+ | ----- | ||
+ | ----- | ||
+ | |||
+ | == Information menu (Bottom of page) == | ||
+ | |||
+ | ==== Documentation ==== | ||
+ | :: Various documentation (GhoSST, data use, SSDM, experimental systems, …) | ||
+ | |||
+ | ==== Contact ==== | ||
+ | :: To give feedback on interface and data (question, comment, error report, user case..) | ||
+ | |||
+ | ==== History ==== | ||
+ | :: Provides an history of the development of SSDM datamodel and GhoSST interface | ||
+ | |||
+ | ==== Credits ==== | ||
+ | :: List of contributors, | ||
+ | |||
+ | ==== Statistics ==== | ||
+ | :: Provides user & database content & download statistics, and link to a stat engine | ||
+ | |||
+ | ----- | ||
+ | ----- | ||
+ | |||
+ | == ''' | ||
+ | |||
+ | 3 levels available [future: | ||
+ | :*; Simple | ||
+ | :::[future (also in ‘home’)] | ||
+ | :*; Guided | ||
+ | |||
+ | :*; Advanced | ||
+ | |||
+ | :*; List (currently in Data) | ||
+ | ----- | ||
+ | |||
+ | === Simple Search === | ||
+ | [Future] | ||
+ | : Search on: species formula or name, phase type ?, spectral range type, spectrum type | ||
+ | |||
+ | ----- | ||
+ | |||
+ | === Guided Search === | ||
+ | |||
+ | : 2 different search options in 7 steps: | ||
+ | ::* ''''' | ||
+ | ::: Starts by “Instrument type” field | ||
+ | ::* ''''' | ||
+ | ::: Starts by “species type” field | ||
+ | |||
+ | :*; Add next field | ||
+ | ::: to add the next selection field | ||
+ | :*;View results | ||
+ | ::: to display the list of selected spectra | ||
+ | :*; Reset | ||
+ | ::: to reset the search to the first step (set to --All--) | ||
+ | |||
+ | :''''' | ||
+ | ::- Select one or several choices by left Clic (first), Ctrl+Clic (next), shift+Clic (range), deselect by Ctrl+Clic. No choice = '-- All --' | ||
+ | ::- The list of choices adjusts depending on the data available with your filters | ||
+ | ::- The next field open or refresh automatically after your choice | ||
+ | ::- You can force to go to next field with the 'Add next field' buttom | ||
+ | ::- After each step the number of spectra satisfying your filters is displayed (upper right) | ||
+ | |||
+ | :''''' | ||
+ | ::*; Instrument type (list) | ||
+ | :::: choose one or more | ||
+ | |||
+ | ::*; Instrument technique (list) | ||
+ | :::: choose one or more | ||
+ | |||
+ | ::*; Spectral range type (list) | ||
+ | :::: either choose a typical range or set to ' | ||
+ | |||
+ | ::*; Spectral range unit (list) | ||
+ | :::: choose a wavenumber / wavelength / frequency unit | ||
+ | |||
+ | ::*; Spectral range min/max | ||
+ | :::: set one or both limits (min and/or max) in the above unit | ||
+ | |||
+ | ::*; Matter family (list) | ||
+ | :::: choose one or more | ||
+ | |||
+ | ::*; Species type (list) | ||
+ | :::: choose one or more | ||
+ | |||
+ | ::*; Species name | ||
+ | :::: write a molecule or mineral name (after the 2 first letters it will propose you a list of relevant choices) | ||
+ | |||
+ | ::*; Species formula | ||
+ | :::: write a molecule or mineral formula, or just any part of it (after the 2 first letters it will propose you a list of relevant choices) | ||
+ | |||
+ | ::*; Species relevance (list) | ||
+ | :::: choose one or more | ||
+ | |||
+ | ----- | ||
+ | |||
+ | === Advanced Search === | ||
+ | |||
+ | 27 different optional selection fields | ||
+ | |||
+ | :*;View results | ||
+ | :: to display the list of selected spectra | ||
+ | :*; Reset | ||
+ | :: to reset the search to the first step (set to --All--) | ||
+ | |||
+ | :''''' | ||
+ | ::- Select one or several choices by left Clic (first), Ctrl+Clic (next), shift+Clic (range), deselect by Ctrl+Clic. No choice: '-- All --' | ||
+ | ::- After each choice the number of products (spectra and band lists) satisfying your filters is displayed (upper right) | ||
+ | |||
+ | :''''' | ||
+ | |||
+ | :--- ''' | ||
+ | |||
+ | ::*; Species type (list) | ||
+ | |||
+ | ::*; Species formula | ||
+ | |||
+ | ::*; Species name and code | ||
+ | |||
+ | ::*; Species relevance (list) | ||
+ | |||
+ | :--- ''' | ||
+ | |||
+ | ::*; Matter origin | ||
+ | |||
+ | ::*; Material name | ||
+ | |||
+ | ::*; Material family | ||
+ | |||
+ | ::*; Layers number | ||
+ | |||
+ | ::*; Layer texture | ||
+ | |||
+ | :--- ''' | ||
+ | |||
+ | ::*; Constituent mixing | ||
+ | |||
+ | ::*; Constituent family | ||
+ | |||
+ | ::*; Phase type | ||
+ | |||
+ | ::*; Species compound | ||
+ | |||
+ | ::*; Compound state | ||
+ | |||
+ | :--- ''' | ||
+ | |||
+ | ::*; Temperature min / max (K) | ||
+ | :::: Sample temperature | ||
+ | ::::: you can set one or both limits | ||
+ | |||
+ | :--- ''' | ||
+ | |||
+ | ::*; Unit (list) | ||
+ | |||
+ | :::: - wavenumber (cm-1 or m-1) | ||
+ | :::: - wavelength (mm, µm, nm, or Angstrom) | ||
+ | :::: - frequency unit (Khz, MHz or Ghz) | ||
+ | |||
+ | ::*; Type (list) | ||
+ | |||
+ | :::: either choose a typical spectral range or set to ' | ||
+ | ::::: | ||
+ | ::::: | ||
+ | ::::: | ||
+ | ::::: | ||
+ | ::::: | ||
+ | ::::: | ||
+ | ::::: | ||
+ | ::::: | ||
+ | ::::: | ||
+ | ::::: | ||
+ | ::::: | ||
+ | ::::: | ||
+ | ::::: | ||
+ | ::::: | ||
+ | |||
+ | ::*; Custom min./max. | ||
+ | :::: set one or both limits (min and/or max) in the above unit | ||
+ | ::: | ||
+ | |||
+ | :--- ''' | ||
+ | |||
+ | ::*; Type | ||
+ | :::: Type of instrument or model | ||
+ | ::::: - ‘FTIR spectrometer’: | ||
+ | ::::: - ‘grating spectrometer’: | ||
+ | ::::: - ‘AOTF spectrometer’: | ||
+ | ::::: - ‘CRDS spectrometer’: | ||
+ | ::::: - ‘laser diode spectrometer’: | ||
+ | ::::: - ‘SWIFT spectrometer’: | ||
+ | ::::: - ‘narrow-band filters spectrometer’: | ||
+ | ::::: - ‘grating spectro-imager’: | ||
+ | ::::: - ‘narrow-band filters imager’: | ||
+ | ::::: - ‘spectro-gonio radiometer’: | ||
+ | ::::: - ‘Raman spectrometer’: | ||
+ | ::::: - ‘Raman micro-spectrometer’: | ||
+ | ::::: - ‘FTIR micro-spectrometer’: | ||
+ | ::::: - ‘ellipsometer’: | ||
+ | ::::: - ‘radiative transfer simulation’: | ||
+ | ::::: - ‘quantum mechanical simulation’: | ||
+ | |||
+ | ::*; Technique | ||
+ | |||
+ | ::*; Laboratory | ||
+ | :::: Laboratory who has copyright on the spectrum (where it has been recorded, and/or laboratory of the visiting experimetalists) | ||
+ | ::: | ||
+ | |||
+ | :--- ''' | ||
+ | |||
+ | ::*; Type | ||
+ | |||
+ | :::: Type(s) of spectra – depends on the instrument type | ||
+ | ----- | ||
+ | |||
+ | === Search result Tables === | ||
+ | |||
+ | :: The search results are displayed in 2 tables '''' | ||
+ | :: They provide synthetic information on: | ||
+ | ::: - ''''' | ||
+ | ::: - ''''' | ||
+ | ::: - ''''' | ||
+ | ::: - ''''' | ||
+ | ::: - ''''' | ||
+ | ::: - ''''' | ||
+ | ::: - ''''' | ||
+ | ::: - ''''' | ||
+ | ::: - ''''' | ||
+ | |||
+ | :''''' | ||
+ | :::- '''''' | ||
+ | :::- '''''' | ||
+ | :::- '''''' | ||
+ | |||
+ | ----- | ||
+ | |||
+ | === Spectrum graph & info === | ||
+ | |||
+ | : accessed from the 'table icon' in the search result table | ||
+ | |||
+ | ==== Graph ==== | ||
+ | |||
+ | : display the graph in its original unit | ||
+ | |||
+ | ::* Legend: | ||
+ | |||
+ | ::* Settings: | ||
+ | :::: - Errors: | ||
+ | :::: - Infos: | ||
+ | :::: - Unit: | ||
+ | :::: - Color(s): ' | ||
+ | |||
+ | ::* Zooms: | ||
+ | :::: - Full range | ||
+ | :::: - Valid range | ||
+ | |||
+ | ::* Navigation: | ||
+ | :::: - Vertical zoom: Click + Mouse move (Up or Down) | ||
+ | :::: - Horizontal zoom: Click + Mouse move (Left or Right) | ||
+ | :::: - Zoom out: Click | ||
+ | :::: - Zoom reset: Double Click | ||
+ | :::: - Pan: [SHIFT] + Click + Mouse move (Up, Down, Left or Right) | ||
+ | |||
+ | ==== Spectrum info ==== | ||
+ | |||
+ | ----- | ||
+ | |||
+ | === Sample info === | ||
+ | |||
+ | : the sample info is structured in several levels: | ||
+ | ::*; Sample | ||
+ | |||
+ | ::*; Layer(s) | ||
+ | |||
+ | ::*; Material(s) | ||
+ | |||
+ | ::*; Constituent(s) | ||
+ | |||
+ | ::*; Specie(s) | ||
+ | |||
+ | ----- | ||
+ | |||
+ | == Data == | ||
+ | |||
+ | === List === | ||
+ | :Allow to search all used data in the database by categories and with a few filters | ||
+ | |||
+ | ==== Species ==== | ||
+ | :*; Molecules | ||
+ | ::: can filter by type, formula, name, InChI / CAS. Can exclude isotopes | ||
+ | |||
+ | :*; Minerals | ||
+ | ::: can filter by type, formula, name, class, code and crystal system. Can restrict to hydrated minerals | ||
+ | |||
+ | ==== Sample data ==== | ||
+ | :*; Samples | ||
+ | ::: can filter by name, layer type, matter origin and family, constituent phase type and compound, species type, formula, name, code and relevance | ||
+ | |||
+ | :*; Materials | ||
+ | ::: can filter by name, matter origin and family, constituent phase type and compound, species type, formula, name, code and relevance | ||
+ | |||
+ | :*; Matters | ||
+ | ::: can filter by main type (currently mineral or fluid), name, reference, origin. Mineral family, type, rock type and texture. Fluid family and type. | ||
+ | |||
+ | ==== Spectral data ==== | ||
+ | :*; Spectra | ||
+ | ::: can filter by ID, type, update date, publication state, sample ID. Can include parent/sons spectra. | ||
+ | |||
+ | :*; Band lists | ||
+ | ::: can filter by type and title, sample name, constituent name, family, phase and arrangement, | ||
+ | |||
+ | ==== Bibliography ==== | ||
+ | :*; Publication | ||
+ | ::: can filter by document type, publication state and year, author name, journal name, volume and first page, content and keyword | ||
+ | |||
+ | ----- | ||
+ | |||
+ | === Export === | ||
+ | |||
+ | :Allow to export the selected spectra and associated information (spectrum, sample, experiment, instrument) | ||
+ | |||
+ | :[future: export of band list] | ||
+ | |||
+ | :*; Table of selected spectra: | ||
+ | :: - display ID, spectrum type, file title, spactral range min/max, sample species, date | ||
+ | |||
+ | :*; Parameters: | ||
+ | :: - Wavenumber/ | ||
+ | :: - Spectral range: whole range, valid range only, user defined min/max | ||
+ | :: - Value/ | ||
+ | :: - Spectra data file: type and format | ||
+ | :: - Export archive file: filename, compression type | ||
+ | |||
+ | ----- | ||
+ | ----- | ||
+ | |||
+ | == Producer == | ||
+ | : Restricted to data provider | ||
+ | |||
+ | === Full search === | ||
+ | |||
+ | : Allow to search all data in the database: fundamental data, sample data and publications | ||
+ | |||
+ | ==== Species and Matters data ==== | ||
+ | :*; Atoms | ||
+ | ::: can filter by ID, UID, type, symbol, name, mass number A, and atomic number Z. Can exclude isotopes | ||
+ | |||
+ | :*; Chemical functions | ||
+ | ::: can filter by ID, UID, type, formula, and name | ||
+ | |||
+ | :*; Molecules | ||
+ | ::: can filter by ID, UID, type, formula, name, and InChI / CAS. Can exclude isotopes | ||
+ | |||
+ | :*; Minerals | ||
+ | ::: can filter by ID, UID, type, formula, name, class, code and crystal system. Can restrict to hydrated minerals | ||
+ | |||
+ | :*; Matters | ||
+ | ::: can filter by ID, UID, main type (currently mineral or fluid), name, reference, origin. Mineral family, type, rock type and texture. Fluid family and type. | ||
+ | |||
+ | :*; Solutions | ||
+ | ::: can filter by ID, UID, type and name | ||
+ | |||
+ | ==== Sample data ==== | ||
+ | :*; Samples | ||
+ | ::: can filter by sample ID, UID, name, generic and processing type; Layer type and formation mode; Material ID, matter origin and family; Constituent ID, phase type and compound; Species type, formula, name, code and relevance | ||
+ | |||
+ | :*; Layers | ||
+ | ::: can filter by layer ID, UID, type, texture, formation mode; Material number and mixing | ||
+ | |||
+ | :*; Materials | ||
+ | ::: can filter by material ID, UID, name; Matter origin and family; Constituent phase type and compound; Species type, formula, name, code and relevance | ||
+ | |||
+ | :*; Constituents | ||
+ | ::: can filter by constituent ID, UID, name, family, phase type and compound; Species type, formula, name, code and relevance | ||
+ | |||
+ | ==== Spectral data ==== | ||
+ | |||
+ | :*; Experiments | ||
+ | ::: can filter by: | ||
+ | :::: - experiment ID and UID. Can include parent/sons experiments | ||
+ | :::: - sample ID and UID. Can include parent/sons sample | ||
+ | :::: - spectrum ID and UID. Can include parent/sons spectra | ||
+ | :::: - experimentalist ID, UID and name | ||
+ | |||
+ | :*; Spectra | ||
+ | ::: can filter by: | ||
+ | :::: - spectrum ID, UID, type, level, original file name. Can include parent/sons spectra | ||
+ | :::: - spectrum dates: creation, update and validation | ||
+ | :::: - validator name | ||
+ | :::: - publication state | ||
+ | :::: - sample ID | ||
+ | |||
+ | :*; Band lists | ||
+ | ::: can filter by: | ||
+ | :::: - bandlist ID, UID, type and title, | ||
+ | :::: - sample ID, UID and name | ||
+ | :::: - constituent ID, UID, name, family, phase and arrangement | ||
+ | :::: - species ID, UID, type, formula, name, code and relevance | ||
+ | |||
+ | ==== Instrument data ==== | ||
+ | :*; Instruments | ||
+ | ::: can filter by: | ||
+ | :::: - instrument ID, UID, name, type, technique | ||
+ | :::: - laboratory | ||
+ | |||
+ | :*; Laboratories | ||
+ | ::: can filter by: | ||
+ | :::: - laboratory ID, UID, name/ | ||
+ | |||
+ | :*; Experimentalists | ||
+ | ::: can filter by: | ||
+ | :::: - experimentalists ID, UID, name, status | ||
+ | :::: - laboratory | ||
+ | |||
+ | ==== Bibliography ==== | ||
+ | |||
+ | :*; Publications | ||
+ | ::: can filter by: | ||
+ | :::: - publication ID, UID, document type, publication state and year; | ||
+ | :::: - author name; | ||
+ | :::: - journal name, volume and first page | ||
+ | :::: - publication content and keywords | ||
+ | |||
+ | ==== Other data ==== | ||
+ | |||
+ | :*; OpenEnum | ||
+ | ::: can filter by: | ||
+ | :::: - keyword name | ||
+ | |||
+ | ----- | ||
+ | |||
+ | === Import === | ||
+ | |||
+ | : Use specially formatted XML files for data import | ||
+ | |||
+ | :: - various validity checks are performed: xml format, enumerations, | ||
+ | :: - The simulation mode allow the debug of the file before import | ||
+ | |||
+ | ::*; Matter | ||
+ | ::: Import matter(s) | ||
+ | |||
+ | ::*; Sample | ||
+ | ::: Import a sample | ||
+ | |||
+ | ::*; Experiment & Spectra | ||
+ | ::: Import an experiment and its spectra | ||
+ | |||
+ | ::*; Bandlist | ||
+ | ::: Import bandlists and bands | ||
+ | |||
+ | ----- | ||
+ | |||
+ | === Import history === | ||
+ | |||
+ | :: List all imported data with link | ||
+ | ::: - Import type, data IDs, Date, producer name | ||
+ | |||
+ | ----- | ||
+ | |||
+ | === Help === | ||
+ | |||
+ | : go to 'Data providers documentation' | ||
+ | |||
+ | :: - How to prepare step by step the XML files for the import of data in the GhoSST database | ||
+ | :: - General rules to fill data XML files | ||
+ | :: - How to import data with XML files | ||
+ | :: - XML import files: repository of the xml templates for: | ||
+ | ::: Fundamental data imports | ||
+ | ::::* Species | ||
+ | ::::* Matters | ||
+ | ::::* Objects (for meteorites) | ||
+ | ::::* States (for bandlist) | ||
+ | ::::* Publications | ||
+ | ::::* Laboratory / Experimentalists | ||
+ | ::::* Instruments | ||
+ | ::: Data imports | ||
+ | ::::* Samples | ||
+ | ::::* Experiments + instrument parameters + spectra | ||
+ | ::::* Band lists / bands | ||
+ | |||
+ | ----- | ||
+ | ----- | ||
+ | |||
+ | == Manager == | ||
+ | : Restricted to database manager | ||
+ | |||
+ | === Users === | ||
+ | |||
+ | : Allow to: | ||
+ | :: - list the users information: | ||
+ | :: - edit and change users type and status | ||
+ | |||
+ | ----- | ||
+ | |||
+ | === OpenEnums === | ||
+ | |||
+ | : Management of the attribute of the OpenEnumerations | ||
+ | ::* ''''' | ||
+ | ::: - keyword, attribute value | ||
+ | ::* ''''' | ||
+ | ::* ''''' | ||
+ | ::: - ' | ||
+ | ::: - ' | ||
+ | |||
+ | ----- | ||
+ | |||
+ | === Import === | ||
+ | |||
+ | : Use specially formatted XML files for data import | ||
+ | |||
+ | :: - various validity checks are performed: xml format, enumerations, | ||
+ | :: - the simulation mode allow the debug of the file before import | ||
+ | |||
+ | ::*; Species | ||
+ | ::: Import fundamental species (atoms, molecules, minerals, chemical functions, solutions) | ||
+ | |||
+ | ::*; Instruments & labs | ||
+ | ::: Import instruments, | ||
+ | |||
+ | ::*; Publications | ||
+ | ::: Import publications | ||
+ | |||
+ | ::*; States | ||
+ | ::: Import molecule states | ||
+ | |||
+ | ----- | ||
+ | |||
+ | === Import history === | ||
+ | |||
+ | :: List all imported data with link | ||
+ | ::: - Import type, data IDs, Date, producer name | ||
+ | |||
+ | ----- | ||
+ | ----- | ||
+ | |||
+ | == User == | ||
+ | |||
+ | *; Before login | ||
+ | |||
+ | === Register === | ||
+ | |||
+ | :: Allow to register as a GhoSST user | ||
+ | ::*; Ask for: | ||
+ | ::: - e-mail address and new password | ||
+ | ::: - your first and last names | ||
+ | ::: - Your organization, | ||
+ | ::*; ' | ||
+ | |||
+ | ----- | ||
+ | |||
+ | === Login === | ||
+ | |||
+ | :: To login as a registered user in Ghosst | ||
+ | ::: - user + password | ||
+ | |||
+ | ----- | ||
+ | |||
+ | *; After login | ||
+ | |||
+ | === Information === | ||
+ | |||
+ | :: Allow to change your personal information and login password | ||
+ | |||
+ | ----- | ||
+ | |||
+ | === Export History === | ||
+ | |||
+ | : Log of all exported data, with link | ||
+ | ::: - Import type, data IDs, export date | ||
+ | |||
+ | ----- | ||
+ | |||
+ | === Logout === | ||
+ | |||
+ | :: Allow to logout | ||
+ | |||
+ | ----- | ||
+ | ----- | ||